CMSB — PROGRAM

Days: Friday, 24 July 2026 Saturday, 25 July 2026

Friday, 24 July 2026
08:45-09:00 Opening session CMSB
Location: B2.01
09:00-10:00 Keynote: Anna Niarakis CMSB
Location: B2.01
10:00-10:30 Coffee Break CMSB
Location: B2.01
10:30-12:30 Boolean and Qualitative Networks CMSB
Location: B2.01
10:30-11:00
Source-Target Control of Boolean Networks with Minimal Edge Perturbations (abstract) 30 min
Gustavo Magaña-López1, Andrzej Mizera2, Jun Pang3
1 Université du Luxembourg,
2 University of Warsaw
3 University of Luxembourg
11:00-11:30
Modulation-Reaction Networks (abstract) 30 min
Leo Lobski1, Yoàv Montacute2
1 University College London
2 National Institute of Informatics
11:30-12:00
Inference of qualitative models from steady-state data via weighted MaxSMT (abstract) 30 min
Ondřej Huvar1, Nikola Beneš1, Martin Jonáš1, David Šafránek1, Samuel Pastva1
1 Masaryk University
12:00-12:30
pyModRev: a Python Tool for Model Revision of Boolean Networks (abstract) 30 min
Pedro T. Monteiro1,4, Filipe Gouveia2,3
1 INESC-ID
2 LASIGE
3 Ciências - Universidade de Lisboa
4 IST - Universidade de Lisboa
12:30-14:00 Lunch CMSB
Location: B2.01
14:00-16:00 Rule-Based and Stochastic Modelsule-Based and Stochastic Models CMSB
Location: B2.01
14:00-14:30
Statistical model checking for rule-based models in the Kappa language (abstract) 30 min
Albin Salazar1, Jérôme Feret2, Tatjana Petrov3
1 University of Konstanz, Centre for the Advanced Study of Collective Behaviour
2 DI ENS, École Normale Supérieure, PSL, CNRS, INRIA
3 Università degli Studi di Trieste, Centre for the Advanced Study of Collective Behaviour, Max Planck Institute of Animal Behavior
14:30-15:00
Efficient Stochastic Trace Generation for Transcription (abstract) 30 min
Arman Ferdowsi1, Matthias Függer2, Thomas Nowak2
1 University of Vienna
2 Université Paris-Saclay, CNRS, ENS Paris-Saclay, LMF, Gif-sur-Yvette
15:00-15:30
Mamdani-Driven Fuzzy Reaction Systems (abstract) 30 min
Linda Brodo1, Moreno Falaschi2, Fiamma Romagnoli2, Elisa B.P. Tiezzi2
1 Dipartimento di Scienze Economiche e Aziendali, University of Sassari
2 Department of Information Engineering and Mathematics, Univ. of Siena
15:30-16:00
Incremental Kasa: Static Analysis of Kappa Models at Edit Time (tool paper) (abstract) 30 min
Jérôme FERET1, Rebecca GHIDINI1
1 DI ENS, École Normale Supérieure, PSL, CNRS, INRIA
16:00-16:30 Coffee Break CMSB
Location: B2.01
16:30-18:30 Poster Session CMSB
Location: B2.01
Saturday, 25 July 2026
09:00-10:00 Keynote: Miguel Rocha CMSB
Location: B2.01
10:00-10:30 Coffee Break CMSB
Location: B2.01
10:30-12:30 Constraint-Based Modeling and Molecular Computation CMSB
Location: B2.01
10:30-11:00
Inferring Minimal Culture Media using Biologically Constrained Combinatorial Optimization (abstract) 30 min
MOANA AULAGNER1, ANNE SIEGEL1, SAMUEL BLANQUART1
1 Univ Rennes, Inria, CNRS, IRISA - UMR 6074, F-35000, Rennes, France
11:00-11:30
On the Design of an Analog-Dyadic Converter CRN (abstract) 30 min
Mathieu Hemery1
1 Inria, Centre de Saclay
11:30-12:00
Analog computation with transcriptional networks (abstract) 30 min
David Doty1, Mina Latifi1, David Soloveichik2
1 University of California Davis
2 The University of Texas at Austin
12:00-12:30
Metabolic Transformation Algorithm: A Systems Biology Approach to Aging and Alzheimer’s Disease (abstract) 30 min
Bruno Sá1, Catarina Gomes1, Miguel Rocha1
1 University of Minho
12:30-14:00 Lunch CMSB
Location: B2.01
14:00-15:30 Causal Inference and Multi-Omics Integration 1 CMSB
Location: B2.01
14:00-14:30
Metabolic Flux Inference in a Cheese Microbial Community via comFI: a Biology-informed Approach for Time-resolved Multi-omics Integration (abstract) 30 min
sthyve Tatho1,4, Valentina Baldazzi2,3, Simon Labarthe1,4
1 Univ. Bordeaux, INRAE, BIOGECO, F-33610, Cestas, France
2 Université Côte d’Azur, INRAE, ISA, Sophia-Antipolis, France
3 Inria, Université Côte d’Azur, INRAE, CNRS, MACBES, Sophia-Antipolis, France
4 University of Bordeaux, INRAE, Talence, France
14:30-15:00
GRNgen: a Generator of Gene Regulatory Networks Fitting Graph and Motif Properties (abstract) 30 min
Alexandre Tan-Lhernould1, Thierry Dorval2, François Fages3
1 INRIA Saclay, Institut Servier d'Innovation Thérapeutique
2 Institut Servier d'Innovation Thérapeutique
3 INRIA Saclay
15:00-15:30
Consensus Enhances Individual Causal Models: a Use Case on Lung Cancer Driven by Cellular Pathways (abstract) 30 min
Arnaud Lang1, Rodrigo Henrique Ramos2, Safaa Al-Ali1, Mohammadreza Mousavi3, Anna Calissano4, Irene Balelli1
1 Inria
2 Federal Institute of São Paulo
3 King's College London
4 University College London
15:30-16:00 Coffee Break CMSB
Location: B2.01
16:00-17:00 Causal Inference and Multi-Omics Integration 2 CMSB
Location: B2.01
16:00-16:30
Graph Learning Models for Temporal Gene Expression Prediction and the Role of Interactions Topology (abstract) 30 min
Alessandro Dipalma1, Alessio Micheli1, Paolo Milazzo1, Francesco Simonetti1, Domenico Tortorella1
1 University of Pisa
16:30-17:00
Multi-view clustering of transcriptomics and methylomics data elucidates glioma molecular stratification (abstract) 30 min
Carolina Pé-Curto1, Roberta Coletti2, Marta B. Lopes2
1 NOVA School of Science and Technology, Universidade NOVA de Lisboa
2 Center for Mathematics and Applications (NOVA Math), NOVA School of Science and Technology, Universidade NOVA de Lisboa
17:00-17:30 Closing session CMSB
Location: B2.01
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